read.acmap {Racmacs}

Read in acmap data from a file

Description

Reads an antigenic map file and converts it into an acmap data object.

Usage

read.acmap(
  filename,
  optimization_number = NULL,
  sort_optimizations = FALSE,
  align_optimizations = FALSE
)

Arguments

filename

Path to the file.

optimization_number

Numeric vector of optimization runs to keep, the default, NULL, keeps information on all optimization runs

sort_optimizations

Should optimizations be sorted in order of stress when the map data is read?

align_optimizations

Should optimizations be rotated and translated to match the orientation of the first optimization as closely as possible?

Value

Returns the acmap data object.

See Also

Other functions for working with map data: acmap(), addOptimization(), agReactivityAdjustments(), as.json(), edit_agNames(), edit_srNames(), keepBestOptimization(), keepSingleOptimization(), layerNames(), orderPoints, read.titerTable(), removePoints, save.acmap(), save.coords(), save.titerTable(), subsetCommonPoints, subsetMap()