| mapResiduals {Racmacs} | R Documentation |
Get a table of residuals from an acmap
Description
This is the difference between the table distance and the map distance
Usage
mapResiduals(map, exclude_nd = FALSE, optimization_number = 1)
Arguments
map |
The acmap object |
exclude_nd |
Should values associated with non-detectable measurements like <10 be set to NA |
optimization_number |
The optimization number |
Value
Returns a matrix of residuals, showing the residual error between map distance and table distance for each antigen-sera pair.
See Also
Other map diagnostic functions:
agCohesion(),
bootstrapBlobs(),
bootstrapMap(),
checkHemisphering(),
dimensionTestMap(),
logtiterTable(),
map-table-distances,
mapBootstrapCoords,
mapDistances(),
mapRelaxed(),
pointStress,
ptBootstrapBlob,
ptBootstrapCoords(),
ptLeverage,
ptTriangulationBlob,
recalculateStress(),
stressTable(),
tableColbases(),
tableDistances(),
triangulationBlobs(),
unstableMaps
Other functions relating to map stress calculation:
logtiterTable(),
mapDistances(),
pointStress,
recalculateStress(),
stressTable(),
tableColbases(),
tableDistances()