| mapDistances {Racmacs} | R Documentation |
Return calculated map distances for an acmap
Description
Takes the acmap object and calculates euclidean distances between antigens and sera for the currently selected or specified optimization.
Usage
mapDistances(map, optimization_number = 1)
Arguments
map |
The acmap data object |
optimization_number |
The optimization number |
Value
Returns a matrix of map distances with antigens as rows and sera as columns.
See Also
Other map diagnostic functions:
agCohesion(),
bootstrapBlobs(),
bootstrapMap(),
checkHemisphering(),
dimensionTestMap(),
logtiterTable(),
map-table-distances,
mapBootstrapCoords,
mapRelaxed(),
mapResiduals(),
pointStress,
ptBootstrapBlob,
ptBootstrapCoords(),
ptLeverage,
ptTriangulationBlob,
recalculateStress(),
stressTable(),
tableColbases(),
tableDistances(),
triangulationBlobs(),
unstableMaps
Other functions relating to map stress calculation:
logtiterTable(),
mapResiduals(),
pointStress,
recalculateStress(),
stressTable(),
tableColbases(),
tableDistances()