| BBB_NMP_pl_subset {RZooRoH} | R Documentation |
Example for "pl" format specification
Description
A dataset containing real genotype likelihoods in phred scores for 1,000 SNPs. The data is available for ten individuals and the first 1,000 SNPs on chromosome 1. The data corresponds to a low-fold sequencing experiment. There are three columns per individuals (for genotypes 00, 01 and 11).
Usage
BBB_NMP_pl_subset
Format
A data frame with 1,000 rows and 35 variables:
- chr
The chromosome number
- marker_name
The marker id
- pos
The position of the marker
- allele1
The name of the first marker allele
- allele2
The name of the second marker allele
- id1_pl1
The AA phred likelihood for the first individual
- id1_pl2
The AB phred likelihood for the first individual
- id1_pl3
The BB phred likelihood for the first individual
- id2_pl1
The AA phred likelihood for the second individual
- id2_pl2
The AB phred likelihood for the second individual
- id2_pl3
The BB phred likelihood for the second individual
- id3_pl1, id3_pl2, id3_pl3, id4_pl1, id4_pl2, id4_pl3, id5_pl1, id5_pl2, id5_pl3, id6_pl1, id6_pl2, id6_pl3, id7_pl1, id7_pl2, id7_pl3, id8_pl1, id8_pl2, id8_pl3, id9_pl1, id9_pl2, id9_pl3, id10_pl1, id10_pl2, id10_pl3
The phred likelihoods for the other individuals