| BBB_NMP_ad_subset {RZooRoH} | R Documentation |
Example for "ad" format specification
Description
A dataset containing real allele depth information for 1,000 SNPs. The data is available for ten individuals and the first 1,000 SNPs on chromosome 1. The data corresponds to a low-fold sequencing experiment. There are two columns per individuals (read counts for allele 1 and for allele 2).
Usage
BBB_NMP_ad_subset
Format
A data frame with 1,000 rows and 25 variables:
- chr
The chromosome number
- marker_name
The marker id
- pos
The position of the marker
- allele1
The name of the first marker allele
- allele2
The name of the second marker allele
- id1_ad1
The read count for the first individual at the first markrer
- id1_ad2
The read count for the first individual at the second markrer
- id2_ad1
The read count for the second individual at the first markrer
- id2_ad2
The read count for the second individual at the second markrer
- id3_ad1, id3_ad2, id4_ad1, id4_ad2, id5_ad1, id5_ad2, id6_ad1, id6_ad2, id7_ad1, id7_ad2, id8_ad1, id8_ad2, id9_ad1, id9_ad2, id10_ad1, id10_ad2
The read counts for the other individuals