| BBB_NMP_GP_subset {RZooRoH} | R Documentation |
Example for "gp" format specification
Description
A dataset containing real genotype probabilities for 1,000 SNPs. The data is available for ten individuals and 1,000 SNPs on chromosome 10. The data corresponds to a low-fold sequencing experiment. There are three columns per individuals (for genotypes 00, 01 and 11).
Usage
BBB_NMP_GP_subset
Format
A data frame with 1,000 rows and 35 variables:
- chr
The chromosome number
- marker_name
The marker id
- pos
The position of the marker
- allele1
The name of the first marker allele
- allele2
The name of the second marker allele
- id1_gp1
The AA genotype probability for the first individual
- id1_gp2
The AB genotype probability for the first individual
- id1_gp3
The BB genotype probability for the first individual
- id2_gp1
The AA genotype probability for the second individual
- id2_gp2
The AB genotype probability for the second individual
- id2_gp3
The BB genotype probability for the second individual
- id3_gp1, id3_gp2, id3_gp3, id4_gp1, id4_gp2, id4_gp3, id5_gp1, id5_gp2, id5_gp3, id6_gp1, id6_gp2, id6_gp3, id7_gp1, id7_gp2, id7_gp3, id8_gp1, id8_gp2, id8_gp3, id9_gp1, id9_gp2, id9_gp3, id10_gp1, id10_gp2, id10_gp3
The genotype probabilities for the other individuals