validate.pathways.db {RVA}

Validate Pathways DB

Description

To ensure selected db name is correct.

Usage

validate.pathways.db(pathway.db, customized.pathways)

Arguments

pathway.db

The databse to be used for encrichment analysis. Can be one of the following, "rWikiPathways", "KEGG", "REACTOME", "Hallmark","rWikiPathways_aug_2020"

customized.pathways

the customized pathways in the format of two column dataframe (column name as "gs_name" and "entrez_gene") to be used in analysis

References

Xingpeng Li, Tatiana Gelaf Romer & Siddhartha Pachhai RVA - RNAseq Visualization Automation tool.