validate.baseline {RVA}

Validate Baseline Values

Description

Ensures that user-input baseline.val and baseline.flag parameters are valid with respect to the annot dataframe.

Usage

validate.baseline(annot, baseline.val, baseline.flag)

Arguments

annot

The annotation dataframe.

baseline.val

The baseline value passed by the user.

baseline.flag

The baseline.flag passed by the user.

Details

Specifically, validates that baseline.flag value(s) are columns in annot, and that baseline.val value(s) occur at least once in their respective baseline.flag columns.

References

Xingpeng Li, Tatiana Gelaf Romer & Siddhartha Pachhai RVA - RNAseq Visualization Automation tool.