get.cutoff.df {RVA}

Create ggplot object for number of differntially expressed genes with different FDR and fold change cutoff.

Description

This function processes dataframe from plot_cutoff_single function and produces a ggplot object which depicts the number of differntially expressed genes with different FDR and fold change cutoff.

Usage

get.cutoff.df(datin, pvalues, FCs, FCflag = "logFC", FDRflag = "adj.P.Val")

Arguments

datin

Dataframe from plot_cutoff_single.

pvalues

A set of p-values for FDR cutoff to be checked.

FCs

A set of fold change cutoff to be checked.

FCflag

The column name of the log2FC in the summary statistics table.

FDRflag

The column name of the False Discovery Rate (FDR) in the summary statistics table.