group_information {RTCC}R Documentation

Genomic data linked to saline lagoons.

Description

A dataset containing genomic data of 544 genomes that matched 16s rRNA data from saline lagoons of the Monegros desert area.

Usage

group_information

Format

A data frame with 544 rows and 14 variables:

genome

Genome IMG code

Genome_Size

Genome size

GC_perc

GC percentage

Coding_base_perc

Conding base percentage

CDS_perc

CDS percentage

RNA_perc

RNA percentage

rRNA_count

rRNA count

Transporter_perc

Transporter proteins percentage

Signal_peptide_perc

Signal peptide percentage

Transmembrane_perc

Transmembrane proteins percentage

Gene_Count

Gene count

min_env

Minimum environmental value where the organism has been observed

max_env

Minimum environmental value where the organism has been observed

rel_abundance

Relative abundance of the organism on the metacommunity

...

Source

Triadó-Margarit, X., Capitán, J.A., Menéndez-Serra, M. et al. A Randomized Trait Community Clustering approach to unveil consistent environmental thresholds in community assembly. ISME J 13, 2681–2689 (2019).


[Package RTCC version 0.1.1 Index]