loopLength {RRNA}

internal function that determines the length of a loop

Description

Used by RNAPlot to get the length of a loop

Usage

loopLength(input, start)

Arguments

input

CT file makeCt("((((...))))","AAAACCCUUUU")

start

Position of the first nucleotide in the the loop

Value

Retuns a list contianing the output and stems

Author(s)

JP Bida

Examples

ct=makeCt("((((...((((..))))..((((...)))).))))","AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")
out=loopLength(ct,4)