RRNA-package {RRNA}

RNA secondary structure ploting

Description

Set of functions for creating and manipulating RNA secondary structure plots from CT files or bracket notations.

Details

Package:	RRNA
Type:	Package
Version:	1.0
Date:	2015-07-27
License:	GPL-3

Author(s)

JP Bida Maintainer: JP Bida <[e-mail]

Examples

### Create a CT file from bracket notation
ct=makeCt("(((...(((...)))...(((...)))...)))","AAAUUUCCCAAAGGGUUUAAAGGGUUUCCCUUU")
coord=ct2coord(ct)
RNAPlot(coord,hl=c("GGGUUU","AAAUUU"),seqcols=c(2,4),labTF=TRUE)