filter_transformed_data {RQdeltaCT}

filter_transformed_data

Description

This function filters transformed Ct data (filtered Ct, delta Ct, and 2^-dCt data) according to the used filtering criteria (see parameters).

Usage

filter_transformed_data(
  data,
  remove.Gene = c(""),
  remove.Sample = c(""),
  remove.Group = c("")
)

Arguments

data

Object returned from make_Ct_ready() or delta_Ct() functions.

remove.Gene

Character: vector with names of genes to remove from data.

remove.Sample

Character: vector with names of samples to remove from data.

remove.Group

Character: vector with names of groups to remove from data.

Value

Data frame with filtered data.

Examples

library(tidyverse)
data(data.Ct)
data.CtF <- filter_Ct(data.Ct,
                      remove.Gene = c("Gene2","Gene5","Gene6","Gene9","Gene11"),
                      remove.Sample = c("Control08","Control16","Control22"))
data.CtF.ready <- make_Ct_ready(data.CtF, imput.by.mean.within.groups = TRUE)
data.dCt <- delta_Ct(data.CtF.ready, ref = "Gene8")
data.dCtF <- filter_transformed_data(data.dCt, remove.Sample = c("Control11"))

dim(data.dCt)
dim(data.dCtF)