test.correlation {RPPanalyzer} | R Documentation |
Tests for correlations in RPPA data
Description
Tests for correlation between protein expression value and any continuous data using cor.test.
Usage
test.correlation(x, param, method.cor = "kendall",
method.padj = "BH", file = "correlation_plot.pdf")
Arguments
x |
List containing RPPa data set |
param |
character describing the parameter |
method.cor |
character string describing the correlation |
method.padj |
character string describing the method for the p-value correction for multiple testing. |
file |
character string |
Value
generates a pdf file
Author(s)
Heiko Mannsperger <h.mannsperger@dkfz.de>
See Also
For information about the argument method.cor see cor.test
,
informations about methods.padj can be found under p.adjust
Examples
## Not run:
library(RPPanalyzer)
data(dataIII)
dataIII_median <- sample.median(dataIII)
test.correlation(dataIII_median,param="staging")
## End(Not run)
[Package RPPanalyzer version 1.4.9 Index]