simpleBoxplot {RPPanalyzer}

Draws boxplots of groups of an RPPA data set.

Description

Draws boxplots of groups of an RPPA data set. Additionally a grouping order for plotting can be provided here.

Usage

simpleBoxplot(x, param, orderGrp=NULL, file = "boxplot_groups.pdf")

Arguments

x

List with RPPA data with aggregated replicate spots

param

Character value of one of the columns of the sampledescription matrix, i.e. x[[4]], describing the phenodata that should be analyzed

orderGrp

defines the ordering of the subgroups in param, i.e. vector of specifically ordered values of param

file

Title of the file that will be exported.

Value

Generates a PDF file

Author(s)

Silvia von der Heyde, Heiko Mannsperger

Examples

## Not run: 
library(RPPanalyzer)
	
data(dataIII)
dataIII_median <- sample.median(dataIII)
simpleBoxplot(x=dataIII_median, param="rank", 
	orderGrp=c("vx","zx","yzr","rxi"), file="simpleBoxplot.pdf")
    
## End(Not run)