plotQC {RPPanalyzer} | R Documentation |
Plot target and blank signal from RPPA control samples
Description
Plots target and blank signal from control samples of an RPPA data set in one plot. Exports pdf file.
Usage
plotQC(x, file = "target_vs_blank.pdf", arrays2rm = c("protein"))
Arguments
x |
RPPA data list as output from |
file |
name of the PDF file |
arrays2rm |
character describing the arrays that dont have be plotted |
Details
This function genrates scatter plots in a pdf file from not yet normalized, serially diluted
control samples (annotated as control
in the sample_type
column
of the sampledescription file) of RPPA data to get an impression of the antibody dynamic. An
array with blank as target description is needed.
Value
generates a PDF file
Author(s)
Heiko Mannsperger <h.mannsperger@dkfz.de>
Examples
## Not run:
library(RPPanalyzer)
data(dataIII)
plotQC(dataIII,file="plotQC.pdf")
## End(Not run)
[Package RPPanalyzer version 1.4.9 Index]