| dataII {RPPanalyzer} | R Documentation |
Reverse phase protein array data, samples from a stimulation time course
Description
The data Set is a list of four elements. Sample.median and sample.mads are matrices
containing logged signal intensities and errors, the data frames arraydescription and sampledescription
comprising feature and phenodata.
Usage
data(dataII)Format
List
Details
The data set is a list of four elements with data of a original reverse phase
array experiment. The elements Sample.median and sample.mads are 624 times 12 matrices
containing logged signal intensities and errors for every sample of the
experiment. The values are background corrected and normalized against total protein content.
Arraydescription is a data frame, describing the incubation of every array
refering the column of the matrices. Required rows are target
and AB_ID with characters and array.id (four integers linked with "-").
Sampledescription is a data frame according to the rows of the
matrices annotating the samples. The columns "sample", "stimulation",
"inhibition", "stim_concentration", and "time"
are describing the time course experiment.
Source
The data set contains original reverse phase protein array signals from a stimulation time course experiment with randomized pheno and feature data.
Examples
data(dataII)
str(dataII)