RPPAPreFitQC-class {RPPASPACE}

Class “RPPAPreFitQC”

Description

The RPPAPreFitQC class represents the inputs necessary to determine the quality control rating of a reverse-phase protein array slide.

Usage

RPPAPreFitQC(rppa, useAdjusted=FALSE)
is.RPPAPreFitQC(x)
## S4 method for signature 'RPPAPreFitQC'
qcprob(object, ...)
## S4 method for signature 'RPPAPreFitQC'
summary(object, ...)

Arguments

rppa

object of class RPPA containing the raw data to be assessed

useAdjusted

logical scalar. If TRUE, spatially adjusted measures are used instead of Net.Value and Raw.Value.

object

object of (sub)class RPPAPreFitQC

x

object of (sub)class RPPAPreFitQC

...

extra arguments for generic routines

Value

The RPPAPreFitQC generator returns an object of subclass of class RPPAPreFitQC.

The is.RPPAPreFitQC method returns TRUE if its argument is an object of subclass of class RPPAPreFitQC.

The summary method returns a summary of the underlying data frame.

Objects from the Class

Objects are created by calls to the RPPAPreFitQC factory method.

Methods

qcprob

signature(object = "RPPAPreFitQC"):
Placeholder method which must be implemented by subclass.

summary

signature(object = "RPPAPreFitQC"):
Placeholder method which must be implemented by subclass.

Warning

The current implementation only handles designs with 5 dilution series.
Anything else will fail.

Author(s)

P. Roebuck [e-mail] James M. Melott [e-mail]