RPPANormalizationParams-class {RPPASPACE} | R Documentation |
Class “RPPANormalizationParams”
Description
The RPPANormalizationParams class is used to bundle the parameter set together that control how to perform spatial adjustment into a reusable object.
Usage
RPPANormalizationParams(method,
arglist=NULL)
is.RPPANormalizationParams(x)
## S4 method for signature 'RPPANormalizationParams'
paramString(object, slots, ...)
Arguments
method |
character string specifying normalization method to use |
arglist |
list of named key/value pairs representing argument list to
be passed upon invocation of |
object |
object of class |
x |
object of class |
slots |
strings specifying |
... |
extra arguments for generic routines |
Details
The method
argument is combined with the arglist
argument
prior to invocation of normalize
method.
Value
The RPPANormalizationParams
generator returns an object of class
RPPANormalizationParams
.
The is.RPPANormalizationParams
method returns TRUE
if its
argument is an object of class RPPANormalizationParams
.
The paramString
method returns a character vector, possibly
empty but never NULL
.
Objects from the Class
Although objects of the class can be created by a direct call to
new, the preferred method is to use the
RPPANormalizationParams
generator function.
Slots
name
:character string; see arguments above
method
:character string; see arguments above
arglist
:list of named key/value pairs; see arguments above
Methods
- paramString
-
signature(object = "RPPANormalizationParams")
:
Returns string representation of object.
Warning
The paramString
method should not be called by user except for
informational purposes. The content and format of the returned string
may vary between different versions of this package.
Author(s)
P. Roebuck paul_roebuck@comcast.net, James M. Melott jmmelott@mdanderson.org
See Also
Examples
showClass("RPPANormalizationParams")
normparams <- RPPANormalizationParams(method="medpolish",
arglist=list(calc.medians=FALSE))
paramString(normparams)