RN_BarresLab_FPKM {RNentropy}

RN_BarresLab_FPKM

Description

Data expression values (mean FPKM) for different cerebral cortex cell from Zhang et al: "An RNA-Seq transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex", J Neurosci 2014 Sep. RN_BarresLab_design is the corresponding design matrix.

Usage

data("RN_BarresLab_FPKM")

Format

A data frame with 12978 observations on the following 7 variables.

Astrocyte

a numeric vector

Neuron

a numeric vector

OPC

a numeric vector

NFO

a numeric vector

MO

a numeric vector

Microglia

a numeric vector

Endothelial

a numeric vector

Source

Zhang Y, Chen K, Sloan SA, Bennett ML, Scholze AR, O'Keeffe S, Phatnani HP, Guarnieri P, Caneda C, Ruderisch N, Deng S, Liddelow SA, Zhang C, Daneman R, Maniatis T, Barres BA, Wu JQ. An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. J Neurosci. 2014 Sep 3;34(36):11929-47. doi: 10.1523/JNEUROSCI.1860-14.2014. Erratum in: J Neurosci. 2015 Jan 14;35(2):846-6. PubMed PMID: 25186741; PubMed Central PMCID: PMC4152602.

Data were downloaded from https://web.stanford.edu/group/barres_lab/brain_rnaseq.html

Examples

data(RN_BarresLab_FPKM)