toPhylo {RNeXML} | R Documentation |
nexml to phylo
Description
nexml to phylo coercion
Usage
toPhylo(tree, otus)
Arguments
tree |
an nexml tree element |
otus |
a character string of taxonomic labels, named by the otu ids. e.g. (from get_otu_maps for the otus set matching the relevant trees node. |
Value
phylo object. If a "reconstructions" annotation is found on the edges, return simmap maps slot as well.
[Package RNeXML version 2.4.11 Index]