get_trees_list {RNeXML} | R Documentation |
extract all phylogenetic trees in ape format
Description
extract all phylogenetic trees in ape format
Usage
get_trees_list(nexml)
Arguments
nexml |
a representation of the nexml object from which the data is to be retrieved |
Value
returns a list of lists of multiphylo trees, even if all trees
are in the same trees
node (and hence the outer list will be of length
or if there is only a single tree (and hence the inner list will also be of length 1. This ensures a consistent return type regardless of the number of trees present in the nexml file, and also preserves any grouping of trees.
See Also
get_trees
get_flat_trees
get_item
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_trees_list(nex)
[Package RNeXML version 2.4.11 Index]