get_flat_trees {RNeXML}

get_flat_trees

Description

extract a single multiPhylo object containing all trees in the nexml

Usage

get_flat_trees(nexml)

Arguments

nexml

a representation of the nexml object from which the data is to be retrieved

Details

Note that this method collapses any hierarchical structure that may have been present as multiple trees nodes in the original nexml (though such a feature is rarely used). To preserve that structure, use get_trees instead.

Value

a multiPhylo object (list of ape::phylo objects). See details.

See Also

get_trees get_trees get_item

Examples

comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_flat_trees(nex)