get_characters_list {RNeXML}

Extract the character matrix

Description

Extract the character matrix

Usage

get_characters_list(nexml, rownames_as_col = FALSE)

Arguments

nexml

nexml object (e.g. from read.nexml)

rownames_as_col

option to return character matrix rownames (with taxon ids) as it's own column in the data.frame. Default is FALSE for compatibility with geiger and similar packages.

Value

the list of taxa

Examples

comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_characters_list(nex)