bulgeLoopsPlot |
A function for bulge loops plotting |
bulge_loop |
Internal function for getting bulge loops in a RNA secondary structure |
ct2dot |
ct2dot |
DataCluster1 |
A RNA secondary structure file containing structure information |
DataCluster2 |
A RNA secondary structure file containing structure information |
DataCluster3 |
A RNA secondary structure file containing structure information |
DataCluster4 |
A RNA secondary structure file containing structure information |
DataCompareStr1 |
A RNA secondary structure file containing structure information |
DataCompareStr2 |
A RNA secondary structure file containing structure information |
DataRNAstr |
A RNA secondary structure file containing structure information |
externalLoopsPlot |
A function for bulge loops plotting |
external_loop |
Internal function for getting external loops in a RNA secondary structure |
getCompare |
Internal function for getting similarity score in a RNA secondary structure |
getScore |
Internal function for getting similarity score in a RNA secondary structure |
getSubStr |
Internal function for getting substructure information in a RNA secondary structure |
hairpinLoopsPlot |
A function for hairpin loops plotting |
hairpin_loop |
Internal function for getting hairpin loops |
internalLoopsPlot |
A function for internal loops plotting |
internal_loop |
Internal function for getting internal loops |
multiBranchLoopsPlot |
A function for multi-branch loops plotting |
multi_branch_loop |
Internal function for getting multi-branch loops |
RNAcirPlot |
function for plotting RNA secondary structure in a circos style |
RNAstrCluster |
A function for RNAs clustering by their structure similarites |
RNAstrPlot |
A function for whole RNA secondary structure plotting |
stem |
Internal function for getting stems |
stemPlot |
A function for stems plotting |
strCompare |
strCompare |
strComparePlot |
strComparePlot |