filter_genes {RNAseqQC}

Filter genes with low counts

Description

Filter genes with low counts

Usage

filter_genes(dds, min_count = 5, min_rep = 3)

Arguments

dds

A DESeqDataSet

min_count, min_rep

keep genes with at least min_count counts in at least min_rep replicates

Value

A DESeq2::DESeqDataSet object with only those genes that meet the filter criteria.

Examples

library("DESeq2")
dds <- makeExampleDESeqDataSet()
filter_genes(dds)