generateBoxplotsMultipleCats {RIbench}

Wrapper function to generate all boxplots for the specified analytes split by defined categories

Description

Wrapper function to generate all boxplots for the specified analytes split by defined categories

Usage

generateBoxplotsMultipleCats(
  analytes,
  errorListAll,
  colList,
  nameList,
  category = c("fractionPathol", "fractionPathol_cum", "N", "N_cum", "OvFreq",
    "OvFreq_cum"),
  catList = NULL,
  catLabels = NULL,
  errorParam = "zzDevAbs_Ov",
  outline = TRUE,
  withMean = TRUE,
  withDirect = TRUE,
  withCats = TRUE,
  titlePart = NULL,
  outputDir = NULL,
  filenamePart = NULL,
  ylim1Vec = NULL,
  ylim2Vec = NULL,
  yticks1Vec = NULL,
  yticks2Vec = NULL,
  ...
)

Arguments

analytes

(character) vector specifying for which analytes the plots should be generated

errorListAll

(named list) containing the overall benchmark results per algorithm (names of list elements should be the names of the algorithms)

colList

(character) vector specifying the colors used for the different algorithms (should correspond to columns of benchmark results)

nameList

(character) vector specifying the names used in the legend (should correspond to columns of benchmark results), if NULL, colnames will be used

category

(character) defining the category used for creating the subsets. All defined sub-features are used for the categorization. Choose from "fractionPathol" (default), "N", or "OvFreq", individual or cumulative ("_cum"); if category is set this will be used to define catList and catLabels

catList

(character) vector specifying the categories for which the boxes should be drawn

catLabels

(character) vector specifying the labels to the associated categories used for the x-axis

errorParam

(charcter) specifying for which error measure the plot should be generated

outline

(logical) indicating whether outliers should be drawn (TRUE, default), or not (FALSE)

withMean

(logical) indicating whether the mean should be plotted as well (default: TRUE)

withDirect

(logical) indicating whether the box of the direct method should be elongated to facilitate comparison (default:TRUE)

withCats

(logical) set to TRUE if categories (e.g. pathological fraction) should be plotted (default: FALSE)

titlePart

(character) specifying the latter part of the title

outputDir

(character) specifying an output directory

filenamePart

(character) specifying a filename for the plot

ylim1Vec

(numeric) vector specifying the limits in y-direction for the first granular scale

ylim2Vec

(numeric) vector specifying the limits in y-direction for the second less detailed scale

yticks1Vec

(numeric) vector specifying the ticks in y-direction for the first granular scale

yticks2Vec

(numeric) vector specifying the ticks in y-direction for the second less detailed scale

...

additional arguments passed forward to other functions

Value

No return value. Instead, a plot is generated.

Author(s)

Tatjana Ammer [e-mail]