RCircos.Reset.Core.Components {RCircos} | R Documentation |
Reset Methods for Modifying RCircos Core Components
Description
Reset RCircos core components: plot ideogram, plot position, and plot parameters.
Usage
RCircos.Reset.Plot.Ideogram(chrom.ideo)
RCircos.Reset.Plot.Positions(plot.positions)
RCircos.Reset.Plot.Parameters(new.params)
Arguments
chrom.ideo |
Data frame, object of RCircos cytoband data returned from RCircos.Get.Plot.Ideogram(). |
plot.positions |
Data frame, object of RCircos plot positions returned from RCircos.Get.Plot.Positions(). |
new.params |
List, object of RCircos plot positions returned from RCircos.Get.Plot.Parameters() |
Author(s)
Henry Zhang
Examples
## Not run:
library(RCircos);
data(UCSC.HG19.Human.CytoBandIdeogram);
RCircos.Set.Core.Components(
cyto.info=UCSC.HG19.Human.CytoBandIdeogram,
chr.exclude=c("chrX", "chrY"),
tracks.inside=10, tracks.outside=5)
ideo <- RCircos.Get.Plot.Ideogram()
rows <- which(ideo$BandColor=="red"
ideo$BandColor[rows] <- "green"
RCircos.Reset.Plot.Ideogram(ideo)
params <- RCircos.Get.Plot.Parameters()
params$base.per.unit <- 6000
RCircos.Reset.Plot.Paramters(params)
positions <- RCircos.Get.Plot.Positions();
positions[1, 3] <- 0;
RCircos.Reset.Plot.Positions(positions);
## End(Not run)
[Package RCircos version 1.2.2 Index]