WangF {QTL.gCIMapping} | R Documentation |
To perform QTL mapping with wang method
Description
To perform QTL mapping with wang method
Usage
WangF(
pheRaw = NULL,
genRaw = NULL,
mapRaw1 = NULL,
yygg1 = NULL,
flagRIL = NULL,
cov_en = NULL,
Population = NULL,
WalkSpeed = NULL,
CriLOD = NULL
)
Arguments
pheRaw |
phenotype matrix. |
genRaw |
genotype matrix. |
mapRaw1 |
linkage map matrix. |
yygg1 |
the transformed covariate matrix. |
flagRIL |
if RIL or not. |
cov_en |
raw covariate matrix. |
Population |
population flag. |
WalkSpeed |
Walk speed for Genome-wide Scanning. |
CriLOD |
Critical LOD scores for significant QTL. |
Value
a list
Examples
data(DHdata)
readraw<-Readdata(file=DHdata,fileFormat="GCIM",
method="GCIM",filecov=NULL,MCIMmap=NULL,MultiEnv=FALSE)
DoResult<-Dodata(fileFormat="GCIM",Population="DH",
method="GCIM",Model="Random",readraw,MultiEnv=FALSE)
ws<-WangF(pheRaw=DoResult$pheRaw,genRaw=DoResult$genRaw,
mapRaw1=DoResult$mapRaw1,yygg1=DoResult$yygg1,
flagRIL=DoResult$flagRIL,cov_en=DoResult$cov_en,
Population="DH",WalkSpeed=1,CriLOD=2.5)
[Package QTL.gCIMapping version 3.4 Index]