publish.CauseSpecificCox {Publish} | R Documentation |
Tabulizing cause-specific hazard ratio from all causes with confidence limits and Wald test p-values.
Description
Publish cause-specific Cox models
Usage
## S3 method for class 'CauseSpecificCox'
publish(
object,
cause,
confint.method,
pvalue.method,
factor.reference = "extraline",
units = NULL,
print = TRUE,
...
)
Arguments
object |
Cause-specific hazard model obtained with
|
cause |
Show a table for this cause. If omitted, list all causes. |
confint.method |
See |
pvalue.method |
See |
factor.reference |
See |
units |
See |
print |
If |
... |
passed on to control formatting of parameters,
confidence intervals and p-values. See
|
Details
The cause-specific hazard ratio's are combined into one table.
Value
Table with cause-specific hazard ratios, confidence limits and p-values.
Author(s)
Thomas Alexander Gerds <tab@biostat.ku.dk>
Examples
if (requireNamespace("riskRegression",quietly=TRUE)){
library(riskRegression)
library(prodlim)
library(survival)
data(Melanoma,package="riskRegression")
fit1 <- CSC(list(Hist(time,status)~sex,Hist(time,status)~invasion+epicel+age),
data=Melanoma)
publish(fit1)
publish(fit1,pvalue.stars=TRUE)
publish(fit1,factor.reference="inline",units=list("age"="years"))
# wide format (same variables in both Cox regression formula)
fit2 <- CSC(Hist(time,status)~invasion+epicel+age, data=Melanoma)
publish(fit2)
# with p-values
x <- publish(fit2,print=FALSE)
table <- cbind(x[[1]]$regressionTable,
x[[2]]$regressionTable[,-c(1,2)])
}
[Package Publish version 2023.01.17 Index]