readDataForPI {ProliferativeIndex}

A function for reading data in for use with the ProliferativeIndex package

Description

This function allows the user to read in variance stabalized RNA-seq data and gene model names for subsequent proliferative index calculation and analysis

Usage

readDataForPI(vstData, modelIDs)

Arguments

vstData

Dataframe of user variance stabalized count data (from DESeq2) with samples in columns and genes in rows. Rownames must be genes.

modelIDs

Genes in user identified model for comparison to proliferative index

Examples

readDataForPI(vstTCGA_ACCData_sub, c("AIFM3", "ATP9B", "CTRC", "MCL1", 
"MGAT4B", "ODF2L", "SNORA65", "TPPP2"))