amr_positives {Plasmidprofiler} | R Documentation |
Identify Antimicrobial Resistance Positive Plasmids from Blast Results
Description
This function loads the imported blast results, identifies which plasmids carry AMR genes at highest identity. May have issues with multiple genes per plasmid, currently optimized for identifying one of two genes
Usage
amr_positives(blast.results)
Arguments
blast.results |
Blast results loaded from read_blast or from Global Env |
Value
Two column DF of plasmid names and genes present
Examples
## Not run:
amr_positives(blastdata)
## End(Not run)
[Package Plasmidprofiler version 0.1.6 Index]