positions_ranges {PlasmaMutationDetector2}

The package provide the positions and ranges computed for the Ion AmpliSeq™ Colon and Lung Cancer Panel v2 as a Rdata file positions_ranges.rda.

Description

This file contains 4 variables

• pos_ind, vector of chars, of the form chrN:XXXXXXXXX defining genomic positions of the Ion AmpliSeq™ Colon and Lung Cancer Panel v2

• pos_snp, vector of chars, of the form chrN:XXXXXXXXX defining the known snp genomic positions

• pos_ranges, GRanges object, describing the 92 amplicons of the Ion AmpliSeq™ Colon and Lung Cancer Panel v2

Usage

data(positions_ranges)

Author(s)

N. Pécuchet, P. Laurent-Puig, O. Nordgård and Y. Rozenholc

References

Analysis of base-position error rate of next-generation sequencing to detect tumor mutations in circulating DNA N. Pécuchet, Y. Rozenholc, E. Zonta, D. Pietraz, A. Didelot, P. Combe, L. Gibault, J-B. Bachet, V. Taly, E. Fabre, H. Blons, P. Laurent-Puig in Clinical Chemistry

Novel hybridization- and tag-based error-corrected method for sensitive ctDNA mutation detection using ion semiconductor sequencing Kjersti Tjensvoll, Morten Lapin, Bjørnar Gilje, Herish Garresori, Satu Oltedal, Rakel Brendsdal Forthun, Anders Molven, Yves Rozenholc and Oddmund Nordgård in Scientific Reports

See Also

Prepare_Library