positions_ranges {PlasmaMutationDetector}

The package provide the positions and ranges computed for the Ion AmpliSeq™ Colon and Lung Cancer Panel v2 as a Rdata file positions_ranges.rda.

Description

This file contains 4 variables

• pos_ind, vector of chars, of the form chrN:XXXXXXXXX defining genomic positions of the Ion AmpliSeq™ Colon and Lung Cancer Panel v2

• pos_snp, vector of chars, of the form chrN:XXXXXXXXX defining the known snp genomic positions

• pos_ranges, GRanges object, describing the 92 amplicons of the Ion AmpliSeq™ Colon and Lung Cancer Panel v2

Usage

data(positions_ranges)

Author(s)

N. Pécuchet, P. Laurent-Puig and Y. Rozenholc

References

Analysis of base-position error rate of next-generation sequencing to detect tumor mutations in circulating DNA N. Pécuchet, Y. Rozenholc, E. Zonta, D. Pietraz, A. Didelot, P. Combe, L. Gibault, J-B. Bachet, V. Taly, E. Fabre, H. Blons, P. Laurent-Puig in Clinical Chemistry

See Also

Prepare_Library