phitest {PhitestR}

Appling the Phitest method to a count matrix

Description

Phitest for analyzing the heterogeneity of single-cell populations

Usage

phitest(object, label, ncores = 1, min.cell = 10)

Arguments

object

A matrix of single-cell UMI counts (rows for genes and columns for cells).

label

A character or numeric vector of cluster labels. Length should be the same as cell number and order should match the order in object.

ncores

Number of cores used for parallel computation.

min.cell

An integer specifying a threshold to filter genes. Genes expressed in fewer than min.cell cells are filtered out.

Value

A list of two elements: pval contains the P values, and par contains the estimated parameters.

Author(s)

Wei Vivian Li, [e-mail]