mswhimScores {Peptides}

Compute the MS-WHIM scores of a protein sequence

Description

MS-WHIM scores were derived from 36 electrostatic potential properties derived from the three-dimensional structure of the 20 natural amino acids

Usage

mswhimScores(seq)

Arguments

seq

An amino-acids sequence

Value

The computed average of MS-WHIM scores of all the amino acids in the corresponding peptide sequence.

References

Zaliani, A., & Gancia, E. (1999). MS-WHIM scores for amino acids: a new 3D-description for peptide QSAR and QSPR studies. Journal of chemical information and computer sciences, 39(3), 525-533.

Examples

mswhimScores(seq = "KLKLLLLLKLK")
# [[1]]
#  MSWHIM1    MSWHIM2    MSWHIM3 
# -0.6563636  0.4872727  0.1163636