plot_CountData {PTXQC} | R Documentation |
Plot Protein groups per Raw file
Description
The input is a data.frame with protein/peptide counts, where 'category' designates the origin of information (genuine ID, transferred ID, or both).
Usage
plot_CountData(data, y_max, thresh_line, title)
Arguments
data |
A data.frame with columns 'fc.raw.file', 'counts', 'category' |
y_max |
Plot limit of y-axis |
thresh_line |
Position of a threshold line, indicating the usual target value |
title |
Main title, and optional subtitle (if vector of length 2 is provided) |
Value
GGplot object
Examples
data = data.frame(fc.raw.file = rep(c("file A", "file B"), each=3),
counts = c(3674, 593, 1120, 2300, 400, 600),
category = c("genuine","genuine+transferred","transferred"))
plot_CountData(data, 6000, 4000, c("EVD: Protein Groups count", "gain: 23%"))
[Package PTXQC version 1.1.1 Index]