ScoreInAlignWindow {PTXQC}

Compute the fraction of features per Raw file which have an acceptable RT difference after alignment

Description

Using the result from 'alignmentCheck()', score the features of every Raw file and see if they have been properly aligned. Returned value is between 0 (bad) and 1 (all aligned).

Usage

ScoreInAlignWindow(data, allowed.deltaRT = 1)

Arguments

data

A data.frame with columns 'rtdiff' and 'raw.file'

allowed.deltaRT

The allowed matching difference (1 minute by default)

Value

A data.frame with one row for each raw.file and columns 'raw.file' and 'withinRT' (0-1)