single_Average {PSSMCOOL}

single Average feature

Description

This descriptor is a variant of the Average Block descriptor and is designed to group together rows related to the same amino acid, thus considering domains of a sequence with similar conservation rates.

Usage

single_Average(pssm_name)

Arguments

pssm_name

name of PSSM Matrix file

Value

feature vector of length 400

References

L. Nanni, A. Lumini, and S. J. T. S. W. J. Brahnam, "An empirical study of different approaches for protein classification," vol. 2014, 2014.

See Also

Averag_Block

Examples

X<-single_Average(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))