rpssm {PSSMCOOL}

RPSSM feature

Description

To obtain this feature, first the columns of the PSSM matrix are merged to obtain an L*10 matrix. Then, with a relationship similar to the auto covariance transformation feature, this feature with a length of 110 is obtained from this matrix.

Usage

rpssm(pssm_name)

Arguments

pssm_name

name of PSSM Matrix file

Value

feature vector of length 110

References

Ding, S., et al. (2014) A protein structural classes prediction method based on predicted secondary structure and PSI-BLAST profile, Biochimie, 97, 60-65.

Examples

X<-rpssm(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))