pssm_seg {PSSMCOOL}

PSSM-Seg feature vector

Description

This feature vector uses PSSM-SD to produce Segmented Auto Covariance Features.

Usage

pssm_seg(pssm_name, m = 4)

Arguments

pssm_name

name of PSSM Matrix file

m

a parameter between 1 and 11

Value

feature vector of length 100

References

A. Dehzangi, K. Paliwal, J. Lyons, A. Sharma, A. J. I. A. T. o. C. B. Sattar, and Bioinformatics, "A segmentation-based method to extract structural and evolutionary features for protein fold recognition," vol. 11, no. 3, pp. 510-519, 2014.

See Also

PSSM_SD

Examples

q<-pssm_seg(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"),3)