pse_pssm {PSSMCOOL} | R Documentation |
pseudo position-specific scoring matrix feature
Description
This feature vector is combination of F_{PSSM}
feature vector and vector of
correlation factors correspond to 20 columns in PSSM Matrix. F_{PSSM}
actually is mean of PSSM Matrix
columns of length 20.
Usage
pse_pssm(pssm_name, g = 1)
Arguments
pssm_name |
is the name of PSSM matrix file |
g |
a parameter Which its size corresponds to the database used. |
Value
feature vector of length 20+20*g
References
D.-J. Yu et al., "Learning protein multi-view features in complex space," vol. 44, no. 5, pp. 1365-1379, 2013.
Chou, K.C. and Shen, H.B. (2007) MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM, Biochemical and Biophysical Research Communications, 360, 339-345.
Examples
X<-pse_pssm(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))
[Package PSSMCOOL version 0.2.4 Index]