FPSSM {PSSMCOOL} | R Documentation |
D-FPSSM and SF-PSSM feature vectors
Description
This function produces list of two feature vectors named D-FPSSM and S-FPSSM which then used by FPSSM2 function to construct feature vector of length 100 for each pair of proteins which then used for protein-protein interaction prediction in each dataset.
Usage
FPSSM(pssm_name, hk = 20)
Arguments
pssm_name |
name of PSSM Matrix file |
hk |
a parameter that indicates which amino acid alphabet must be used |
Value
two feature vectors of different length which is used in later steps.
References
Zahiri, J., et al. (2013) PPIevo: protein-protein interaction prediction from PSSM based evolutionary information, Genomics, 102, 237-242.
Examples
X<-FPSSM(system.file("extdata","C7GQS7.txt.pssm",package="PSSMCOOL"),20)
[Package PSSMCOOL version 0.2.4 Index]