| AddUMAP {PRECAST} | R Documentation |
Add UMAP embeddings for a Seurat object
Description
Run UMAP dimensionality reduction on selected features.
Usage
AddUMAP(seuInt, n_comp=3, reduction='PRECAST', assay='PRE_CAST', seed=1)
Arguments
seuInt |
a Seurat object. |
n_comp |
an optional positive integer, specify the number of features to be extracted. |
reduction |
an optional string, means which dimensional reduction (e.g. PRECAST, PCA) to use for the UMAP. Default is PRECAST. |
assay |
Name of assay that that t-SNE is being run on. |
seed |
an optional integer, the random seed to evaluate UMAP. |
Details
Nothing
Value
Return a revised Seurat object by adding UMAP reduction object.
Note
nothing
Author(s)
Wei Liu
See Also
None
[Package PRECAST version 1.6.5 Index]