AddTSNE {PRECAST}

Add tSNE embeddings for a Seurat object

Description

Run t-SNE dimensionality reduction on selected features.

Usage

  AddTSNE(seuInt, n_comp=3, reduction='PRECAST', assay='PRE_CAST', seed=1)

Arguments

seuInt

a Seurat object.

n_comp

an optional positive integer, specify the number of features to be extracted.

reduction

an optional string, means which dimensional reduction (e.g. PRECAST, PCA) to use for the tSNE. Default is PRECAST.

assay

Name of assay that that t-SNE is being run on.

seed

an optional integer, the random seed to evaluate tSNE.

Details

Nothing

Value

Return a revised Seurat object by adding tSNE reduction object.

Note

nothing

Author(s)

Wei Liu

See Also

None