summary.POUMM {POUMM} | R Documentation |
Summarize the results of a POUMM-fit
Description
Summarize the results of a POUMM-fit
Usage
## S3 method for class 'POUMM'
summary(
object,
...,
startMCMC = NA,
endMCMC = NA,
thinMCMC = 1000,
stats = statistics(object),
mode = c("short", "long", "expert")
)
Arguments
object |
a POUMM object returned by POUMM-function (see ?POUMM). |
... |
Not used, but declared for consistency with the generic method summary. |
startMCMC , endMCMC |
integers indicating the range of the MCMC chains to be used for the analysis (excluding the initial warm-up phase) |
thinMCMC |
thinning interval of the MCMC chain to avoid strong autocorrelation between sampled elements; |
stats |
a named list of functions of the form function(par) number , which are called for each sample of each mcmc chain in object. Defaults to a call of statistics(object) returning a list of statistics functions relevant for the object. See also statistics. |
mode |
a character indicating the desired format of the returned summary as follows: 'short' - a data.table with the ML and MCMC estimates of heritability, model parameters, root-value and other statistics. 'long' - same information as in 'short' but including also the samples, which can be convenient for |