loglik_abc_g0_g0Prior {POUMM}

Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.

Description

Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.

Usage

loglik_abc_g0_g0Prior(abc, alpha, theta, sigma, g0, g0Prior)

Arguments

abc

a vector of 3 numerical values denoting the corresponding coefficients in the POUMM likelihood presented as exp(a g0^2 + b g0 + c).

alpha, theta, sigma

parameters of the OU-process.

g0

initial value at the root of the tree (can be NA). See argument parMapping in ?specifyPOUMM.

g0Prior

list object. See parameter g0Prior in ?specifyPOUMM.