scRNA {PLNmodels}

Single cell RNA-seq data

Description

A dataset containing the counts of the 500 most varying transcripts in the mixtures of 5 cell lines in human liver (obtained with standard 10x scRNAseq Chromium protocol).

Usage

scRNA

Format

A data frame named 'scRNA' with 3918 rows (the cells) and 3 variables:

counts

a 500 trancript by 3918 count matrix

cell_line

factor, the cell line of the current row (among 5)

total_counts

Total number of reads for that cell

...

Source

https://github.com/LuyiTian/sc_mixology/