compile_sim_cpp {PKPDsim}

Compile ODE model to c++ function

Description

Compile ODE model to c++ function

Usage

compile_sim_cpp(
  code,
  dose_code,
  pk_code,
  size,
  p,
  cpp_show_code,
  code_init = NULL,
  state_init = NULL,
  declare_variables = NULL,
  variables = NULL,
  covariates = NULL,
  obs = NULL,
  dose = NULL,
  iov = NULL,
  compile = TRUE,
  verbose = FALSE,
  as_is = FALSE
)

Arguments

code

C++ code ODE system

dose_code

C++ code per dose event

pk_code

C++ code per any event (similar to $PK)

size

size of ODE system

p

parameters (list)

cpp_show_code

show output c++ function?

code_init

code for initialization of state

state_init

state init vector

declare_variables

variable declaration for all required variables (including user-specified)

variables

only the user-specified variables

covariates

covariates specification

obs

observation specification

dose

dose specification

iov

iov specification

compile

compile or not?

verbose

show more output

as_is

use C-code as-is, don't substitute line-endings or shift indices

Value

List containing ODE definition in C++ code and simulation function