| Helper.functions {PHYLOGR} | R Documentation |
Helper functions
Description
Several helper functions used by the PHYLOGR main functions (i.e., these functions are called from other functions). These are all one to three lines functions, which are used in lieu of calls to read.table, scan, etc. They are of no immediate use for the end user, but might be helpful for further programming.
Value
Depends on the helper function; here is a summary:
num.sim.tips |
number of tips and number of simulations of a simulated data set |
number.of.simulations |
the number of simulations of a simulated data set |
number.of.tips.inp |
number of tips in inp data file |
number.of.tips.pdi |
ditto for pdi |
number.of.tips.sim |
ditto for sim |
scan.inp.file |
the two columns with data from inp file |
scan.pdi.file |
ditto for pdi |
scan.simulation.file |
ditto for sim file |
tips.names.inp |
the names of tips from an inp file |
tips.names.pdi |
ditto for pdi |
Author(s)
Ramon Diaz-Uriarte and Theodore Garland, Jr.
References
Diaz-Uriarte, R., and Garland, T., Jr., in prep. PHYLOGR: an R package for the analysis of comparative data via Monte Carlo simulations and generalized least squares approaches.